PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_70498_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 180aa    MW: 19630.1 Da    PI: 9.0081
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_70498_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.3e-201160255
                                  AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                         +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g
  cra_locus_70498_iso_1_len_816_ver_3 11 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRG 60
                                         69*******.**********883....5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.0E-321169IPR001471AP2/ERF domain
SMARTSM003807.3E-361174IPR001471AP2/ERF domain
CDDcd000181.82E-291168No hitNo description
PfamPF008472.8E-131160IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-221168IPR016177DNA-binding domain
PROSITE profilePS5103222.7611168IPR001471AP2/ERF domain
PRINTSPR003675.3E-111223IPR001471AP2/ERF domain
PRINTSPR003675.3E-113450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MASAAARESG HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARSLRG  60
SKAKTNFPSA PLPPTALSLD LNLPCSDHRW PPPPGRLVIG EFLRDVSFST AAASTANVVN  120
NASHHHGEAV AIANEQRPAV GSGNVSVGEN EYVYENPGMY FGIVRRGLPI DLNEPPPLWM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A6e-221168563ATERF1
2gcc_A6e-221168563ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012849383.12e-63PREDICTED: ethylene-responsive transcription factor 12
SwissprotQ94ID63e-42ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A068TU632e-65A0A068TU63_COFCA; Uncharacterized protein
STRINGVIT_10s0003g00130.t017e-61(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165